Great question about saving plots could you try passing in an outpath when you call either show or finalize and let me know if it works for you for saving images? File "/usr/lib/python2.7/dist-packages/scipy/sparse/csr.py", line 13, in If the issue still persists, then reinstall all packages together to make sure they are compatible with each other. from sklearn.utils import indexable, _safe_indexing After that, restart the kernel Share Improve this answer answered May 18 at 21:48 Gisel Hernandez Chavez 1 1 As it's currently written, your answer is unclear. I put an edit for the sklearn as well, since i saw that they changed the public/private API. You signed in with another tab or window. Thank you, Richard V On Thursday, August 5, 2021, 11:27:10 AM PDT, ShahbazT @. I suspect you have your own numpy installed which is older than the version that system scipy compiled against (presumably that was 1.11 from my listing above). So my recommended commands would be. Thanks for contributing an answer to Stack Overflow! Share Improve this answer Follow answered Dec 11, 2020 at 11:05 Partha Sen 2,709 1 18 16 Add a comment 0 @rrsquez I think you may be misunderstanding the purpose of our GitHub issues - this is the place where users of Yellowbrick report bugs to the coders and maintainers who work on Yellowbrick. @rebeccabilbro Excuse me for one minute, I'm new to use Yellowbrick and meet the same issue. # See #1137: this allows compatibility for scikit-learn >= 0.24. Does the pip install -U scikit-learn command report any error message? Check the requirements for imbalanced-learn package from here: requirements I was having the same problem and when I ran it with the packages requested from within virtual enviroment, the problem was solved. I think they just finally removed the public utils.safe_indexing in v0.24. @thomasjpfan thank you for creating that issue in scikit-learn - I totally agree that a developer API would be very helpful. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Or conda install -c districtdatalabs yellowbrick==1.3.post1 What is the point of Thrower's Bandolier? Yellowbrick version: I think this is a sklearn bug in that sklearn is pulling numpy warning filters off the stack when importing. By accepting all cookies, you agree to our use of cookies to deliver and maintain our services and site, improve the quality of Reddit, personalize Reddit content and advertising, and measure the effectiveness of advertising. How would "dark matter", subject only to gravity, behave? cannot import name safe_indexing from sklearn utils. How can I randomly select an item from a list? RuntimeError: module compiled against API version a but this version of numpy is 9 cannot import name safe_indexing from sklearn utils. You should look at how you built your wheels for the August release and see what version of Numpy you assumed. COO sparse matrices are However when i import only the sklearn package ( import sklearn) i get no errors, its when i try to Finally please do not use all caps words and multiple exclamation marks in written communication. Relation between transaction data and transaction id, Recovering from a blunder I made while emailing a professor. python-slugify 5.0.2 pip install yellowbrick==0.9.1 scikit-learn==0.22.2. Huge thanks for your great work! and our If seed is already a RandomState instance, return it. Also, @rebeccabilbro, I'm in the process of testing the very code you suggested (i.e. Also, @rebeccabilbro, I'm in the process of testing the very code you suggested (i.e. Make software development more efficient, Also welcome to join our telegram. @rebeccabilbro: I'm happy to report that your suggestion worked (i.e. By clicking Sign up for GitHub, you agree to our terms of service and In the future, please consider your words more carefully and speak with respect as described by our code of conduct. I managed to solve it by conda install yellowbrick=1.3. You are using python notebook. privacy statement. Edit: Here is yellowbrick's github issue if you want to track their progress on a workaround or update for this problem. Best of luck . utils.safe_indexing v0.24. . Save the notebook -> shutdown the kernel -> close and open the notebook again. Linear regulator thermal information missing in datasheet. The skelo package is a simple implementation suitable for small-scale rating systems that fit into memory on a single machine. ImportError: Cannot import name check_build from partially initialize module 'sklearn'. Cannot import models from another app in Django MakeMigration Error on Django - ImportError: cannot import name 'FieldDoesNotExist' from 'django.db.models' Getting error cannot import name 'six' from 'django.utils' when using Django 3.0.0 latest version from django.db import utils ImportError cannot import name utils? matplotlib: 1.5.1 from .csr import * Closely followed the installation procedure on the official website. The axis along which X will be subsampled. Use the following commands: conda install -c conda-forge imbalanced-learn conda install nb_conda # to grant to select conda environments as core of jupyter notebook ***> wrote: Hello @rrsquez and thanks for checking out our project. Should I try to uninstall some packages and reinstall them? @rebeccabilbro thank you so much for your help and activity on this thread. E.g. Yellowbrick relies the following internal scikit-learn tools, some of which we will have to modify or port because of the changes in 0.24: Aside: here is our tiny script for getting scikit-learn imports from our code, if it's helpful to you: https://gist.github.com/bbengfort/3c29ce91dd40b1956b5734bb16b5f950. Return rows, items or columns of X using indices. Well occasionally send you account related emails. Connect and share knowledge within a single location that is structured and easy to search. Cheers! The instructions are not very clear, but one has to load this from WITHIN Jupyter Notebook for it to work. @rebeccabilbro , Thank you for your prompt reply .show(outpath="path.png")) If seed is an int, return a new RandomState instance seeded with seed. How can we know the language is Turing Recognizable if we run the T.M. I shutdown the kernel and restarted it again. Has anyone noticed this problem? I got it to work. Thank you for your help! I searched for this package on https://anaconda.org and it looks like districtdatalabs has the 64bit version privacy statement. The part requirements of Colab is as follow: In other words, it is no problem to refer to this configuration. This means that backward compatibility might be broken without any deprecation cycle. Parameters: Xarray-like, sparse-matrix, list, pandas.DataFrame, pandas.Series How can I check before my flight that the cloud separation requirements in VFR flight rules are met? Huge thanks for your great work! Failure to abide by these requests will result in our blocking you from this repository. on a w not in the language and thus it never halts so we do not get to the next input . cannot import name safe_indexing from sklearn utils. Thanks for contributing an answer to Stack Overflow! I tried uninstalling and installing through pip before, but I actually had to conda uninstall scikit-learn, numpy and scipy. conda install yellowbrick==1.3.post1 GitHub DistrictDataLabs / yellowbrick Public Notifications Fork 543 Star 3.9k Code Issues Pull requests Actions Security Insights New issue ImportError: cannot import name 'safe_indexing' #1141 Closed For my case, i uninstalled the yellowbrick package inside the project env (that was installed via conda install..)and then reinstalled using pip install, and it worked. In your case, your problem had nothing to do with Yellowbrick, but with your own Python environment. It feels like you are yelling at your interlocutor. scikit-learn version: I have the same issue on Windows 10 The part requirements of Colab is as follow: For imblearn.under_sampling, did you try anycodings_python reinstalling the package? to select multiples columns, indices can be one of the Solution 2: Use the following commands. The nature of simulating nature: A Q&A with IBM Quantum researcher Dr. Jamie We've added a "Necessary cookies only" option to the cookie consent popup. Difference between "select-editor" and "update-alternatives --config editor". import sys Thanks, that fixed it for me. https://github.com/numpy/numpy/pull/432/files, import mne from ipython gives runtime warning. However, str is only supported when X is a dataframe. the import should work. Reply to this email directly, view it on GitHub, or unsubscribe. I'm also thrilled to hear that Yellowbrick is running on super computers out there somewhere! Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. cannot import plot_confusion_matrix score:2 plot_confusion_matrix was added in v0.22, if you're seeing this error it most likely means you have an old version of scikit-learn installed. Would you mind providing a few more details to see if we can help? Blogger. ImportError: cannot import name 'safe_indexing' from 'sklearn.utils' Recently we have received many complaints from users about site-wide blocking of their own and blocking of their own activities please go to the settings off state, please visit https://githubmemory.com/settings/account 20 minutes to take effect Linear Algebra - Linear transformation question, Difference between "select-editor" and "update-alternatives --config editor". Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Collecting package metadata (current_repodata.json): working done All rights reserved. python-dateutil 2.8.2 sklearn.utils._safe_indexing(X, indices, *, axis=0) [source] Return rows, items or columns of X using indices. And the suggested Try / Exception lines which did not help! By rejecting non-essential cookies, Reddit may still use certain cookies to ensure the proper functionality of our platform. Warning These utilities are meant to be used internally within the scikit-learn package. I followed these instructions to install https://www.howtogeek.com/830179/how-to-run-stable-diffusion-on-your-pc-to-generate-ai-images/, https://www.howtogeek.com/830179/how-to-run-stable-diffusion-on-your-pc-to-generate-ai-images/. @rebeccabilbro What makes you think that two versions of yellow brick are installed? Great question about saving plots could you try passing in an outpath when you call either show or finalize and let me know if it works for you for saving images? if I could save my figures without the need to show them then my codes would be able to run on faster computers, thank you again for your time and considerations and best regards, I'm delighted to hear that @alirezaro93, and thank you so much for publishing the solution that worked for you so that others can find help in the future. But I don't get the import error with yellowbrick v1.2 and v0.22.0<=sklearn<=v0.23.2 installed. ImportError: cannot import name choice when importing sklearn.mixture ImportError: cannot import name murmurhash3_32 YellowBrick ImportError: cannot import name 'safe_indexing' from 'sklearn.utils' ImportError: cannot import name 'logsumexp' when importing sklearn.model_selection cannot import name 'stop_words' from 'sklearn.feature_extraction' Is the God of a monotheism necessarily omnipotent? Well occasionally send you account related emails. File "/usr/lib/python2.7/dist-packages/scipy/sparse/init.py", line 214, in The selected subset will be 2D. Scikit-learn contains a number of utilities to help with development. Well, it works now. Retrying with flexible solve. .show(outpath="path.png")) - I found the outpath option in the documentation :) I'll report back if the snippet works as intended. I'm trying to plot a silhouette plot for a K-Means model I've run, however, I get the error: ImportError: cannot import name 'safe_indexing' from 'sklearn.utils. Other versions. The text was updated successfully, but these errors were encountered: Hello @heydibyendu and thanks for checking out Yellowbrick. > --> 162 original_result = python_builtin_import (name, globals, locals, fromlist, level) > 163 > 164 is_root_import = thread_local._nest_level == 1 > > /databricks/python/lib/python3.8/site-packages/imblearn/pipeline.py Triage notifications on the go with GitHub Mobile for iOS or Android. Does a summoned creature play immediately after being summoned by a ready action? Whats the grammar of "For those whose stories they are"? I am trying to install 'LearningCurve' from the 'yellowbrick.model_selection' module. Bulk update symbol size units from mm to map units in rule-based symbology, How to handle a hobby that makes income in US. =D Thank you! conda install -c districtdatalabs yellowbrick==1.3.post1 If so, I suggest that the instruction may need to add some tips or more people will suffer from this. i.e. try to run it on 'Colab'. Cookie Notice Python version: Yellowbrick version: scikit-learn version: Hi @rebeccabilbro I have the same issue on Windows 10 Jupyter Notebook 6.4.0 python-dateutil 2.8.2 python-jsonrpc-server 0.4.0 python-language-server 0.36.2 python-slugify 5.0.2 yellowbrick 1.2 scikit-learn 0.24.2 From the Jupiter notebook I have also tried running import sys ! ). point to the modules that the errors arise. It looks like scikit-learn has again changed their public/private API, so utils.safe_indexing is now called utils._safe_indexing.In order for the utility to work in Yellowbrick, we will have to change our usage of safe_indexing to support users with versions of scikit-learn >= 0.24 without deprecating support for users with versions of scikit . at what threshold do we have a human review the data), given a tolerance for precision . Python version: Yellowbrick version: scikit-learn version: Hi @rebeccabilbro I have the same issue on Windows 10 Jupyter Notebook 6.4.0 python-dateutil 2.8.2 python-jsonrpc-server 0.4.0 python-language-server 0.36.2 python-slugify 5.0.2 yellowbrick 1.2 scikit-learn 0.24.2 From the Jupiter notebook I have also tried running import sys ! Parameters: X : array-like, sparse-matrix, list, pandas.DataFrame, pandas.Series. File "", line 1, in : If you have scikitlearn>=0.24 (as far as i see there is a dependency for imblearn now,as scikit-learn (>=0.23) https://imbalanced-learn.org/stable/install.html) you may want to try: Edit ..\Anaconda3\Lib\site-packages\sklearn\utils\ __init__.py. How to use Slater Type Orbitals as a basis functions in matrix method correctly? Making statements based on opinion; back them up with references or personal experience. in my case "conda install -c conda-forge yellowbrick" did the trick and updated my YB from 1.2 to 1.3.post1. I have not been able to do anything since i keep getting errors whenever i try to import anything. Yesterday, I had already ran this command What is \newluafunction? Have you several version of Python installed on your system? conda install -c districtdatalabs yellowbrick, So, I tried running Solution 1: restart the kernel. The instructions are not very clear, but one has to load this from WITHIN Jupyter Notebook for it to work. How should I go about getting parts for this bike? Added try except statement that attempts to import safe_indexing and then _safe_indexing if this produces an ImportError. It sounds like you may have multiple installations of Python on your machine, one of which has YB 1.3 and the other has YB 1.2 your Jupyter notebook (I think you said you were using a notebook?) Sign in OS: (sounds like windows?) Hi @Paulj1989 and thanks for letting us know!. Fix sklearn.utils usage to correspond to scikit-learn's public/private API, sklearn 0.24 issue - AttributeError: 'DecisionTreeClassifier' object has no attribute 'cv', ImportError: cannot import name 'safe_indexing', https://gist.github.com/bbengfort/3c29ce91dd40b1956b5734bb16b5f950, Fix third-party dependency issues and support scikit-learn 0.24 and scipy 1.6, https://repo.anaconda.com/pkgs/main/win-64, https://repo.anaconda.com/pkgs/main/noarch, https://repo.anaconda.com/pkgs/msys2/win-64, https://repo.anaconda.com/pkgs/msys2/noarch, https://www.scikit-yb.org/en/latest/quickstart.html, Patch repodata to include scikit-learn upper bound on affected builds. I had this issue as well and just by reading your responses to other users i was able to figure it out. Privacy Policy. rev2023.3.3.43278. No products in the cart. For example, you'll get the same error with: So, if you want to use system scipy, you'll need to use system numpy. to your account, Latest scikit-learn which works is 1.0.2, so I had to downgrade it. not supported. v0.24. Apologies that you're having difficulties with the dependencies. You signed in with another tab or window. Although they are happy to answer your questions, they cannot read your mind or see your computer and so must provide debugging suggestions for you to work through. Reddit and its partners use cookies and similar technologies to provide you with a better experience. However, this issue came after I had followed the quick start conda install -c districtdatalabs yellowbrick from https://www.scikit-yb.org/en/latest/quickstart.html Is it the official website of YB? Successfully merging a pull request may close this issue. Retrying with flexible solve. The selected subset Hi @ShahbazT and thank you for providing the details about your yellowbrick and scikit-learn versions! sklearn.utils. I would do: @zhihongzeng please don't comment on closed unrelated issues. Staging Ground Beta 1 Recap, and Reviewers needed for Beta 2, Label encoding across multiple columns in scikit-learn, Python 3 ImportError: cannot import name 'model selection' OS X 10.11.3, Anaconda, Difference between scikit-learn and sklearn (now deprecated), conda sklearn error when importing sklearn, Unable to import SMOTE due to error <>, ImportError: cannnot import name 'Imputer' from 'sklearn.preprocessing', How to upgrade the sklearn library in sagemaker.